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VAT Penalties and Interest charges – new regime from 1 January 2023

04 January 2023      Andrea Marshall, Tax Specialist

***Updated  on 17 January re late penalties and Payments on Account***

Just a reminder that the 3 new systems are now in place -

  • A points system – for late submission
  • A penalty system – for late payment of VAT liabilities
  • Late payment interest – for late payment of VAT liabilities

There are also changes to how repayment interest is calculated for overpayments or late refunds of VAT.

HMRC has issued a number of notes explain the new systems which aims to simplify and separate penalties and interest.

 At a high level the new points system works as follows:

  • It applies to VAT accounting periods starting on or after 1 January 2023
  • You get a penalty point for each late VAT return
  • Once you’ve reached a penalty point threshold, you’ll receive a £200 penalty and a further £200 penalty for each subsequent late submission while you’re at the threshold – for quarterly returns the threshold is 4 points, for monthly returns 5 points
  • Penalty points take 24 months to expire.

At a high level the new penalty system works as follows:

  • It applies to VAT accounting periods starting on or after 1 January 2023
  • It applies to payments due in relation to
    • the VAT Return
    • amendment to or correction of a VAT return
    • VAT assessment issued by HMRC
    • But NOT payments on account that are paid late – these are covered by the late payment of the VAT return itself 

      (CH193020 - Penalty reform: penalties for failure to pay VAT on time from 1 January 2023: overview says:  “For Payments on Account and Annual Accounting customers, late payment penalties will only apply to the balancing payment which remains unpaid after the due date for the relevant accounting period.”)

  • Payment is calculated from day 15 at 2% raising to 4% per day (see this table)
  • Negotiating a Time to Pay arrangement with HMRC (and keeping to it), will mean lower, or no, late payment penalties
  • To give businesses time to adapt to the new system, HMRC will not be charging a first late payment penalty until after 31 December 2023

At a high level the new late payment interest system works as follows:

  • It applies to VAT accounting periods starting on or after 1 January 2023
  • If you pay VAT-related amounts late, late payment interest will be due on the amount outstanding, from the first day your payment is overdue to the day you pay it in full
  • It applies to payments due in relation to
    • the VAT Return
    • amendment to or correction of a VAT return
    • VAT assessment issued by HMRC
    • AND payments on account
  • Interest is calculated at the Bank of England base rate plus 2.5%.

At a high level the new Repayment interest system works as follows:

  • Repayment interest is paid at the Bank of England base rate minus 1%, with a minimum rate of 0.5%
  • It will not be paid if you have any outstanding VAT returns
  • If you’ve already paid the VAT to HMRC, Repayment interest is calculated from the day after the later of these two dates:
    • when you paid the VAT to HMRC
    • the deadline for your accounting period
  • If you’ve not paid the VAT to HMRC Repayment interest starts on the day after the later of these two dates:
    • the deadline for your accounting period
    • when you submitted the VAT return or claim
  • For traders making payments on account, if the instalments paid result in paid than owed for a VAT accounting period, repayment interest on the overpaid amount starts from the date the VAT return was due.


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